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Sequence: [G]{4}

Click on Id to open Simulation Metadata and Analyses

Id. PDB Type SubType ForceField Solvent Description Time (ns) Sequence
Id. PDB Type SubType ForceField Solvent Description Time (ns) Sequence
NAFlex_ProtDNA_s1j5n 1J5N Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P Electroneutral 2,000 GGGGTGATTGTTCAG
NAFlex_GGGG NONE Dna B parmBSC1 SPCE DNA-B Duplex Naked ParmBSC1 SPC/E AddedSalt 1,000 GCGGGGGGGGGGGGGGGC
NAFlex_oxyQ 1JRN Dna - parmBSC1 TIP3P DNA Quadruplex Naked ParmBSC1 TIP3P AddedSalt Loop Telomer 1,000 GGGGTTTTGGGG
NAFlex_muGGGG NONE Dna B parmBSC0 SPCE DNA-B Duplex Naked ParmBSC0 SPC/E AddedSalt 1,000 GCGGGGGGGGGGGGGGGC
NAFlex_miniABC_K_5 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol KCl 1,000 GCATTGGGGACACTACGC
NAFlex_miniABC_Na_5 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl 1,000 GCATTGGGGACACTACGC
NAFlex_miniABC_NaK_5 NONE Dna B parmBSC1 SPC/E B-DNA Duplex Naked ParmBSC1 SPC/E 0.15 mol NaCl/KCl 50%/50% 1,000 GCATTGGGGACACTACGC
NAFlex_RNA_miniABC_KCl_5 NONE Rna A parmBSC0+OL3 TIP3P RNA-A Duplex Naked TIP3P AddedSalt 1,000 GCAUUGGGGACACUACGC
NAFlex_CTAG_7 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGGGGGCTAGGGGGGC
NAFlex_CTAG_8 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked ParmBSC1 TIP3P AddedSalt 500 CGGGGGCTAGCCCCGC
NAFlex_apsGGC NONE Dna Anti parallel triplex GGC parmBSC1 TIP3P DNA Triplex Naked ParmBSC1 TIP3P Electroneutral 440 GGGGGGGGGG | CCCCCCCCCC | GGGGGGGGGG
NAFlex_psGGC NONE Dna parallel triplex GGC parmBSC1 TIP3P DNA Triplex Naked ParmBSC1 TIP3P Electroneutral 440 GGGGGGGGGG | CCCCCCCCCC | GGGGGGGGGG
NAFlex_QAPS 156D Dna anti parallel quadruplex parmBSC1 TIP3P DNA Dimeric Quadruplex Telomeric Naked ParmBSC1 TIP3P Electroneutral 440 GGGG | GGGG | GGGG | GGGG
NAFlex_QPS 352D Dna parallel quadruplex parmBSC1 TIP3P DNA Quadruplex Naked ParmBSC1 TIP3P Electroneutral Parallel 440 GGGG | GGGG | GGGG | GGGG
NAFlex_1vt5 1VT5 Dna A parmBSC1 TIP3P DNA-A Duplex Naked ParmBSC1 TIP3P Electroneutral 200 CCCCGGGG
NAFlex_440d 440D Dna A parmBSC1 TIP3P DNA-A Duplex Naked ParmBSC1 TIP3P Electroneutral 200 AGGGGCCCCT
NAFlex_CG_OG1 - Dna B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTCXAACGCACGCXCGCGCTGTCCXCCGCGTTTCXACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_OG2 - Dna B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACXGCTTAAACCXACGTACGCGCXGTCCCCCGCXTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_5hmC1 - Dna B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXGAACGCACGXGCGCGCTGTCXGCCGCGTTTXGACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_5hmC2 - Dna B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCAXGGCTTAAACXGACGTACGCGXGGTCCCCCGXGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_5mC1 - Dna B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXGAACGCACGXGCGCGCTGTCXGCCGCGTTTXGACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_5mC2 - Dna B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCAXGGCTTAAACXGACGTACGCGXGGTCCCCCGXGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_noalch1 - Dna B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTCGAACGCACGCGCGCGCTGTCCGCCGCGTTTCGACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_CG_noalch2 - Dna B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACGGCTTAAACCGACGTACGCGCGGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_DZ1 - Dna B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_PP1 - Dna B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXXAACGCACGXXCGCGCTGTCXXCCGCGTTTXXACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_PP2 - Dna B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCAXXGCTTAAACXXACGTACGCGXXGTCCCCCGXXTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_SSB1 - Dna B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_SSB2 - Dna B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCAXTGCTTAAACXTACGTACGCGXTGTCCCCCGXTTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_TG1 - Dna B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_TT1 - Dna B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXXAACGCACGXXCGCGCTGTCXXCCGCGTTTXXACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_TT2 - Dna B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCAXXGCTTAAACXXACGTACGCGXXGTCCCCCGXXTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TT_noalch1 - Dna B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 XXXXXXXXGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTXTAACGCACGXTCGCGCTGTCXTCCGCGTTTXTACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATC
NAFlex_TF_1a3q_16_dna_wholeA - Dna B parmBSC1 TIP3P DNA-B Duplex Naked TIP3P Electroneutral 200 GGGGATTCCCCTA
NAFlex_TF_1a3q_16_dna_wholeB - Dna B parmBSC1 TIP3P DNA-B Duplex Naked TIP3P Electroneutral 200 GGGGATTCCCCTA
NAFlex_TF_1a3q_17_dna_wholeA - Dna B parmBSC1 TIP3P DNA-B Duplex Naked TIP3P Electroneutral 200 GGGGATTCCCCTA
NAFlex_TF_1a3q_17_dna_wholeB - Dna B parmBSC1 TIP3P DNA-B Duplex Naked TIP3P Electroneutral 200 GGGGATTCCCCTA
NAFlex_TF_1a3q_18_dna_wholeA - Dna B parmBSC1 TIP3P DNA-B Duplex Naked TIP3P Electroneutral 200 GGGGATTCCCCTA
NAFlex_TF_1a3q_18_dna_wholeB - Dna B parmBSC1 TIP3P DNA-B Duplex Naked TIP3P Electroneutral 200 GGGGATTCCCCTA
NAFlex_TF_1a3q_19_dna_wholeA - Dna B parmBSC1 TIP3P DNA-B Duplex Naked TIP3P Electroneutral 200 GGGGATTCCCCTA
NAFlex_TF_1a3q_19_dna_wholeB - Dna B parmBSC1 TIP3P DNA-B Duplex Naked TIP3P Electroneutral 200 GGGGATTCCCCTA
NAFlex_TF_1a3q_16_wholeA - Prot B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 GGGGATTCCCCTA
NAFlex_TF_1a3q_16_wholeB - Prot B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 GGGGATTCCCCTA
NAFlex_TF_1a3q_17_wholeA - Prot B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 GGGGATTCCCCTA
NAFlex_TF_1a3q_17_wholeB - Prot B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 GGGGATTCCCCTA
NAFlex_TF_1a3q_18_wholeA - Prot B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 GGGGATTCCCCTA
NAFlex_TF_1a3q_18_wholeB - Prot B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 GGGGATTCCCCTA
NAFlex_TF_1a3q_19_wholeA - Prot B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 GGGGATTCCCCTA
NAFlex_TF_1a3q_19_wholeB - Prot B parmBSC1 TIP3P -B Duplex Naked TIP3P Electroneutral 200 GGGGATTCCCCTA
NAFlex_v100t9 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked Parm99 TIP3P AddedSalt 100 ATCTTGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGTTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT
NAFlex_v106Bt10 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked Parm99 TIP3P AddedSalt 100 TGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGATATCTT
NAFlex_v106Ct10 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked Parm99 TIP3P AddedSalt 100 GAGGATATCTTTGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGT
NAFlex_v106R2t10 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked Parm99 TIP3P AddedSalt 100 ATCTTTGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT
NAFlex_v106R3t10 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked Parm99 TIP3P AddedSalt 100 ATCTTTGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT
NAFlex_v106t10 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked Parm99 TIP3P AddedSalt 100 ATCTTTGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT
NAFlex_v106t9 NONE Dna B parmBSC1 TIP3P DNA-B Duplex Naked Parm99 TIP3P AddedSalt 50 ATCTTTGCGGCAGTTAATCGAACAAGACCCGTGCAATGCTATCGACATCAAGGCCTATCGCTATTACGGGGTTGGGAGTCAATGGGTTCAGGATGCAGGTGAGGAT